I'd pick up a bottle of Amsoil engine flush for $6.00 (or a pint of LC20), along with a new oil filter. Change just the filter and run the engine in neutral at 2x the normal idle speed for 30 minutes, then change the oil/filter again. I think this engine has some sludge/varnish/carbon residue and you are stirring some of this stuff up. I've had excellent results with the Amsoil flush in situations like this....
The other thing I'd do is check the air filter and intake system (PVC and vacuum lines) for leaks. A silicon level of 13 ppm after 2500 miles is elevated, as are the past two analyses....