My thoughts on the Mn is that it came from fuel - and I am wondering about the sodium. We have seen some SSO's UOA's in the low teens. I dunno, your Si just tracked miles - both (or all three Mn, Si, Na) could be from what is scientifically called dirt and Si/Na are tracking miles for the most part. Remember - even the finest bypass will not filter elements in solution. And that really is what a UOA picks up - be it air filter intrusion or a part failing.
Some pure commentary from the peanut gallery:
1) Gotta love that Moly load. We all know, short and long runs must have moly for wear protection!
2) Wear metals are exceptional. Honda shows little wear. Bypass provides all the protection. Oil? No credit.
3) Make up oil. It somehow ruined this UOA. Yet, recently posted UOA's show more oil usage in much shorter runs and not one comment, or maybe mentioned in passing. I just read a UOA, guy used 1.5 qts in 8K. Do the math for 35K miles. I think people are either math challenged or biased against extended drains with certain oils. I'm just saying.
Anyway, this is good stuff. You are the rare man who posts such information. I have a couple customers doing similar stuff (none with a Honda), but they aren't web types and even when I ask them if I can post for them, they aren't so inclined.
Carry on!