Disclaimer: not a chemist, but was highly interested in chemistry and pretty good at chemistry in college.
I believe that the issue with 2-eha and harming of certain plastics and gasket materials is a valid issue, but it's more of an issue "in a vacuum."
I believe that Prestone uses 2-eha with confidence because they
a) use a lower concentration of it than in earlier, more problematic coolants
b) extensively buffer the coolant to prevent 2-eha from attacking plastics and gasket materials
The main issue of 2-eha attacking nylon 6,6 is valid, yes. The issue with nylon 6,6 is its susceptibility to hydrolysis. The hydrolysis is more favored in acidic environments than in basic environments. Coolant starts off as basic, that's why we have coolant pH test strips and usually we're looking for a value between 8 and 10 when dipping the coolant. An acidic coolant is one that needs to be replaced. I believe that on earlier cars, that used 2-eha, there were issues with air mixing with the coolant, which accelerated the breakdown of the ethylene glycol into acidic byproducts, which created a favorable environment for 2-eha to do its thing to nylon plastics. Something that's emphasized a lot in chemistry is the importance of pH in aqueous chemistry, and how pH can stabilize or destabilize molecules.
It seems reasonable that in a well-sealed cooling system, with minimal amounts of air intrusion, with a coolant that has a robust pH buffering package that keeps the coolant basic, and with a coolant that has a minimal concentration of 2-eha, that 2-eha would have minimal effect on nylon. An acidic pH would increase carbonyl oxygen interaction with protons, which would make the carbonyl carbon more suspectable to nucleophilic attack; at a basic pH, the carbonyl carbon is more stable and less suspectable to attack.
Speaking of acidity, coolants most certainly turn acidic over time -- I dipped a relative's never changed 12 year old/120,000 mile old Toyota Pink coolant with a pH test strip and it came back with a pH around 5 or 6.
All that being said, it's probably easier to sleep at night by going with OEM instead of aftermarket if there are any doubts

.