Honestly, and I really do not mean any disrespect at all to the OP, but if the most basic task of charging a battery, and checking the positive and ground connections on it are this much of an issue that the OP still hasn't been able to properly accomplish in over a month and a half, even considering sudden life issues that may crop up and take away your focus, I believe that this job is way outside of the OP's abilities, and the truck should be handed to a professional, or at least a nearby friend who actually has moderate DIY skills.
You should probably not touch the fuel system at all, or any components that connect to the PCM.
Leave the MAP/MAF sensors for someone who knows how to test them, otherwise you're going to wind up flushing a whole bunch of good parts down the toilet bowl.
There are so many videos on YouTube that will teach you how to test the positive and ground connections, but I think the OP is out of their element, and should hand the vehicle over to someone else to resolve its issues.
And one last thing - all battery connections must be fully tightened anytime you try to start a vehicle that has electronic computers controlling it. The amount of damage you can cause to the car, truck, or motorcycle because of loose connections can add hundreds, if not thousands, to your eventual repair bill if you start damaging wiring harnesses, sensors or modules.