Did you use gaskets, or did you simply bolt manifolds directly to the heads with a bit of RTV as suggested earlier?
I've worked on diesel engines for 12 years, and I've never seen anybody use the aforementioned no-gasket method. Not saying neccesarily that it wouldn't work (as I know there are automotive applications out there that don't use exhaust manifold gaskets), but I'd be a bit leery of it... especially in your case where the exhaust gasket surfaces on the head were not freshly machined.
If you DID use gaskets, and they've failed again, then I suppose you have no choice but to take it back apart. Re-check the flatness of the manifolds, and also check the flatness and surface condition of the exhaust gasket surfaces on the heads.