Yes. 12.6V is still technically 100% charged battery.
I do agree that the shifting surface charge that goes above 12.6V might have *some* level of wear, but... how many DECADES have we had cars that, at idle, at night, the battery would drop below that, every time we're at a light? Add in wipers, defrost grid and defroster, and sit at 11.5... and battery life really hasn't changed, and that was a far more stressing scenario. Deviation between 12.6 and 14+ basically means at cruise, the battery gets a trickle charge. Toward WOT, the alt powers the car and leaves the batt in neutral.
Thus, this also is not a situation where we have a "severely discharged battery" that damages the alt. It's 4 coils of wire, 2 brushes, 6 diodes, and 2 bearings. As long as bearings are solid and brushes are sized adequately and it has airflow, it'll be fine. They could even bias the output schedule to load limit with a rpm/voltage/field coil max mapping.
It's a side topic, but I wonder where this belief that alternators aren't designed to recharge a fully drained battery comes from. Is it really true? Or is it anecdotal? I've only replaced an alt on one car in my 38 years of living (including my cars, parents' cars, friends' cars). I've replaced more batteries than I can possibly count. I've run 400watt and larger inverters off vehicles for extended periods.... a 300 watt AC load equals 30+ amps at 12V, a sizeable load... no alternator failures.
in college, i drained my car battery so many times, leaving lights on, whatever. quick jump, then drive home. no place for a battery charger. the alt had to do that many times... recharge a completely dead battery--- that was a '90 subaru. 60 amp alt. That alternator even spent several hours under water (woops, with the rest of the engine and half of the passenger compartment) when I u-turned into ditch during a flood (couldn't see it). (had the sense to immediately ignition-off to prevent hydrolock, car ran fine after it was eventually winched out, another story-- my date, however, did not handle it as well). so back on to my off-topic, in my own experience I can't see how deep load of an alternator will kill them. shorten their life, sure? but so do heated seats, DRLs, dual zone A/C with capacity equivalent to a 1.5ton household hvac (no joke)...
M (rambling, obviously...)