The original poster said nothing about any concern that his batteries were tired so suggestions to replace them don't seem to address the question. For what it's worth my last two batteries have both lasted 12 years.
I read the question as: will the recondition setting on the new charger do any harm if only used occasionally say once per year. My answer would be no it won't but the caution about damage to the cars electronics is valid. My cars handbook stipulates the maximum safe charging voltage as 14.8 volts so the battery should be disconnected before using a reconditioning setting which will certainly be higher than that maximum safe voltage.
I read the question as: will the recondition setting on the new charger do any harm if only used occasionally say once per year. My answer would be no it won't but the caution about damage to the cars electronics is valid. My cars handbook stipulates the maximum safe charging voltage as 14.8 volts so the battery should be disconnected before using a reconditioning setting which will certainly be higher than that maximum safe voltage.