Well, something got in there as none of the other cylinders were damaged. Nor did this one foul the plug nearly as badly the 2nd 1000 miles.
I still think it was some of the boot/plastic from the tube, it melted and stuck, perhaps causing hot spots on the piston that caused pre-ignition. I did hear pinging, that would be consistent.
Once the piston was damaged, the game was up.
It's all speculation at this point.
Something fell in.
Plug fouled enough in 1000 miles to generate a flashing CEL and totally bridge the plug gap.
Replacement plug not noted as being fouled by mechanic.
If the plastic/rubber turns to a bit of charcoal, it can either bounce around and/or become a pre-ignition source and start to damage the piston by that pre-ignition.
I have some pics of the piston:
http://s960.photobucket.com/albums/ae86/tbright1965/2003_Mazda_Protege_Piston/
You can see some of the rough edges on skirt sides. The top of the piston is not smooth. In fact, it's chewed up a bit on the piston top above the skirts. The same area above the wrist pin is relatively smoother.
It's that damage that makes me think pre-ignition had something to do with what went down.