I couldn't get the cover bolts out of the D44a rear on my Jeep when I did it a few weeks ago. I just used the cheap suction pump I had around (with the diff warm). It took a bit, but I got a little over 2 quarts of fluid out. It holds 2 1/3 quarts, so there was no more than 1/4 quart left in there. Good enough to not worry me.
Still need to do the front diff, although I'll pull the cover if I can get it off. However, the fill plug is stuck, and I've yet to manage to get it out. And of course, always pull the fill plug before draining for this exact reason.