The cast-in exhaust collectors are becoming more common. Honda has used them on most of its J-series V-6 engines (first introduced on the J30A4 in 2003), and then again in some of its I-4 engines (such as the K24 beginning with the K24Z4). It saves weight over the use of an external header, is more compact (which I imagine is helpful when squeezing an OHC V-6 longitudinally into a Wrangler), and offers the potential for better emissions performance, if the catalytic converter is bolted right to the cylinder head (as it typically is when this design strategy is used).
To be fair, Honda's V-6 engines are noted to run high cylinder head temperatures. I do think, though, that this could be overcome with a cooling system designed with this in mind from the beginning, as it appears to have been in Chrysler's case.
I am very interested in the performance of this engine. I was disappointed in the 3.6's performance in Car & Driver's minivan review a few months ago. Despite packing the best power-to-weight ratio of all the vans tested (Chrysler T&C, Honda Odyssey, Nissan Quest, Toyota Sienna), the Chrysler posted only the third-best 0-60 time. It may be true that the torque curve of this engine is peakier than one might like to see in larger vehicle applications. The 6.7 second 0-60 time that Motor Trend posted with a new Wrangler, however, impresses. It even leads me to scratch my head on that middling 0-60 performance of the van with the same engine.