I have an older Jetta (see signature) and yes, my 5 speed MT is notchy. I sometimes have problems getting 1st. However, 2nd gear is very short geared. Going from 3rd to 2nd on mine requires around 1k to 1.5k rpm to rev match. You really gotta step on it. I dunno if this applies to yours.
It's just real picky about that sweet spot. Normally I'll rev too little or too much depending on my speed. Normally when I come to a stop I'll drop down through the gears to 3rd and fully clutch it to a stop. It's a real quirky clutch/flywheel/trans combo.