Some people say that as long as the ATF doesn't smell burnt, then color means very little. I really don't know. But when I used DexVI, I had similar results- it started turning brownish after around 20k. Didn't seem to change how it shifted or anything.
My results with DexVI have been mixed. It worked fine in my old 4T60e in my '94 Corsica (until the transmission died at 182000 miles... I think it was unrelated to the fluid, but I reckon we'll never know). But my '01 Lumina did not shift properly with DexVI. It made the 1-2 full-throttle upshift much to soft... it would do this slip & grab thing. I did a full flush with Transynd (synthetic DexIII) and the problem went away. The full-throttle 1-2 upshift is still softer than I'd prefer, but it's 'normal' for a white-bread family sedan like this. And it no longer does the slip & grab thing.